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LOC_001H80Q.1
Download
Download FASTA
Download metadata TSV
France/LOC_001H80Q.1/2023
G. Piorkowski,
P. Kiwan,
S. Masse,
N. Ayhan,
R. Charrel,
X. de Lamballerie &
A. Falchi
IHU mediterranee, UMR190 Unite des Virus Emergents U1207
Sample details
Collection date
2023
Earliest release date
2024-06-25
Sampling location
France
Isolate name
1207
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-16 16:51
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-06-25
INSDC accession L
PP025040.1
INSDC accession M
PP025039.1
INSDC accession S
PP025038.1
Submission details
Submission ID
PP025040.1.L/PP025039.1.M/PP025038.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-16 16:51:41 UTC
Date released
2026-03-16 16:59:27 UTC
Host
Host
Ixodoidea
Lineage
Segment S Lineage
I
Files
Annotations
LOC_001H80Q.1.embl
Alignment and QC
Total SNPs S
213
Total inserted nucs S
7
Total deleted nucs S
11
Total unknown nucs S
495
Length S
1498 (60.2%)
Variant S
True
Total SNPs L
228
Total deleted nucs L
7
Total unknown nucs L
119
Length L
11246 (92%)
Variant L
True
Total SNPs M
1256
Total inserted nucs M
48
Total deleted nucs M
50
Total unknown nucs M
345
Total frame shifts M
1
Frame shifts M
GPC:86-98(nt:348-386)
Length M
5075 (88.2%)
Variant M
True
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
859
T
A
901
G
C
904
T
G
951
A
G
961
A
C
1015
T
C
1016
T
C
1019
T
A
1120
G
G
1174
A
C
1240
T
A
1338
G
A
1354
T
T
1420
C
C
1495
T
A
1501
G
C
1549
T
A
1555
G
Show more
M
G
242
T
T
246
G
T
247
C
G
248
A
T
249
G
C
250
A
T
251
A
T
253
C
T
254
A
A
255
G
C
256
T
A
257
G
T
259
C
T
260
G
G
261
A
A
262
G
C
264
A
C
266
G
Show more
S
C
160
T
T
163
C
C
166
T
G
171
A
T
172
C
T
175
G
C
178
G
T
181
C
T
182
C
G
184
T
G
196
A
T
199
C
C
208
T
A
209
G
C
214
A
G
229
A
G
232
A
C
235
T
Show more
Deletions
L
12026-12032
M
555-569, 5166-5200
S
1506-1516
Insertions
M
ins_347:GAAA, ins_386:CAGAAACGCGCAGGACTCAAAACCCAAGCACC, ins_5264:TTGCACCTTCAA
S
ins_1545:AGATTGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
L
52
A
GPC:
S
53
E
GPC:
I
54
T
GPC:
T
55
V
GPC:
L
56
P
GPC:
D
57
S
GPC:
P
58
T
GPC:
S
59
T
GPC:
T
60
I
GPC:
V
61
N
GPC:
T
64
D
GPC:
P
66
Q
GPC:
A
67
V
GPC:
S
68
T
GPC:
G
69
T
GPC:
L
70
D
GPC:
E
71
Y
GPC:
V
76
S
Show more
NP
NP:
S
39
N
NP:
S
52
G
NP:
F
73
Y
NP:
A
100
T
NP:
T
124
A
NP:
G
125
N
NP:
A
154
S
NP:
H
195
K
NP:
V
198
I
NP:
D
199
E
NP:
I
220
V
NP:
T
420
S
RdRp
RdRp:
R
292
Q
RdRp:
H
314
Y
RdRp:
N
421
S
RdRp:
I
505
T
RdRp:
C
648
R
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
D
771
E
RdRp:
E
776
K
RdRp:
K
809
R
RdRp:
G
812
E
RdRp:
T
876
S
RdRp:
R
896
S
RdRp:
G
1047
E
RdRp:
V
1228
I
RdRp:
N
1367
D
RdRp:
P
1660
T
Show more
Deletions
GPC
GPC:108-111, GPC:155-159
Insertions
GPC
ins_GPC:131:DVNSLTSPILEAKSSP
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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